Wrapper for scmap::scmapCluster

Wrapper for scmap::scmapCluster

run_scmapCluster(query, ref, gene_set, param, ...)

Arguments

query	the query dataset (SingleCellExperiment object)
ref	the reference dataset (SingleCellExperiment object)
gene_set	a list of characters representing the genes
...	additional parameters passed on to caret::confusionMatrix. For example dnn = c("Prediction","Truth").
threshold	the threshold parameter used in scmapCluster, between 0 and 1

Value

confusion matrix of the true labels in `ref` and the `scmapCluster` predicted labels