Wrapper for scmap::scmapCell

Wrapper for scmap::scmapCell

run_scmapCell(query, ref, gene_set, param, ...)

Arguments

query	the query dataset (SingleCellExperiment object)
ref	the reference dataset (SingleCellExperiment object)
gene_set	a list of characters representing the genes
param	the number of nearest neighbors in scmapCell, an integer
...	additional parameters passed on to caret::confusionMatrix. For example dnn = c("Prediction","Truth").

Value

confusion matrix of the true labels in `ref` and the `scmapCluster` predicted labels