Run scmap over a range of parameters, over multiple gene sets

run_mapping_accuracy_comparison(query, reference, gene_sets,
  method_use = "scmapCluster")

Arguments

query

a SingleCellExperiment object for the query dataset

reference

a SingleCellExperiment object for the reference dataset

gene_sets

a named list of gene sets

method_use

a string denoting whether to use scmapCluster or scmapCell