R/benchmarking.R
run_mapping_accuracy_comparison.Rd
Run scmap over a range of parameters, over multiple gene sets
run_mapping_accuracy_comparison(query, reference, gene_sets, method_use = "scmapCluster")
query | a SingleCellExperiment object for the query dataset |
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reference | a SingleCellExperiment object for the reference dataset |
gene_sets | a named list of gene sets |
method_use | a string denoting whether to use scmapCluster or scmapCell |